Papers of VLEMED

2008

• J. Andreeva, K. Boulebiar, P. Saiz, I. Sidorova, J. Templon, C. Cirstoiu, R. da Rocha, B. Gaidioz., J. Herrala, A. Kan, M. Lamanna, G. Maier and S. Olabarriaga, The Experiment Dashboard for medical applications, 3rd EGEE User Forum, Feb 2008
• S. Caton, M. Caan, S.D. Olabarriaga, O. Rana and B. Batchelor. "Using Dynamic Condor-based Services for Classifying Schizophrenia in Diffusion Tensor Images" to appear in 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid'08)
• T. Glatard, K. Boulebiar, P. de Boer, S. Olabarriaga, fMRI analysis on EGEE with the VBrowser and MOTEUR, 3rd EGEE User Forum, Feb 2008
• G. van Noordende, M. Koot, S.D. Olabarriaga. "Privacy and Trust for Grid-based Medical Applications", to appear in First Workshop on Security, Trust and Privacy in Grid Environments, 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid'08)

2007

• J. Blaas, C.P. Botha, C. Majoie, A. Nederveen, F.M. Vos and F.H. Post, Interactive Visualization of Fused fMRI and DTI for Planning Brain Tumor Resections, Proc. SPIE Medical Imaging 2007
  [pdf]
• M.W.A. Caan, K. Vermeer, L. van Vliet, K. Grimbergen and F. Vos, Pruning datasets in discriminant analysis: A DTI study to schizophrenia, 2007 IEEE International Symposium on Biomedical Imaging (ISBI 2007): From nano to macro, Washington D.C., April 12-15, 2007
• C. Lavini, M.C. de Jonge, M.G. van de Sande, A.J. Nederveen and M. Maas, Pixel by Pixel analysis of DCE MRI curve patterns and its application in imaging of the musculoskeletal system, Magnetic Resonance Imaging 2007; 25(5): 604-612
  [pdf]
• K.C. Maheshwari, S. D. Olabarriaga, C.P. Botha, J.G. Snel, J. Alkemade and A. Belloum, Problem solving environment for medical image analysis, Proc. 20th IEEE International Symposium on Computer-Based Medical Systems, June 20-22, 2007, Maribor, Slovenia
  [pdf]
• S.D. Olabarriaga, A.J. Nederveen, B. Ó Nualláin, Parameter Sweeps for Functional MRI Research in the Virtual Laboratory for e-Science Project, 5th International Workshop on Biomedical Computations on the Grid, as part of the 7th IEEE International Symposium on Cluster Computing and the Grid (CCGrid'07), Rio de Janeiro, May 2007, pp. 685-690
  [pdf]
• S.D. Olabarriaga; J.G. Snel; C.P. Botha and R.G. Belleman, Integrated Support for Medical Image Analysis Methods: from Development to Clinical Application, IEEE Transactions on Information Technology in Biomedicine, 2007; 11 (1): 47-57
  [pdf]
• F. Vos, M.W.A. Caan, K. Vermeer, Ch. Majoie, A. den Heeten and L. van Vliet, Linear and Kernel Fisher Discriminant Analysis for studying Diffusion Tensor Images in Schizophrenia, 2007 IEEE International Symposium on Biomedical Imaging (ISBI 2007): From nano to macro, Washington D.C., April 12-15, 2007
  [pdf]

2006

• J. Blaas, C.P. Botha, B. Peters, F.M. Vos and F.H. Post, "Interactive Exploration of Connective Brain Structure through Diffusion Tensor Imaging", In: Proceedings of the 12th annual conference of the Advanced School for Computing and Imaging (ASCI 2006) (B.P.F. Lelieveldt, B. Haverkort, C.T.A.M. de Laat, J.W.J. Heijnsdijk, Eds.), pp. 228-235, June 2006
  [pdf]
• A. Bucur, R. Kootstra, J. van Leeuwen and H. Obbink, Service-oriented Architecture for Grid-enabling Medical Applications. Published in the proceedings of HealthGrid 2006. Valencia, June 2006
  [pdf]
• M.W.A. Caan, K.A. Vermeer, L.J. van Vliet, C.B.L.M. Majoie, B.D. Peters, G.J. den Heeten and F.M. Vos, Shaving diffusion tensor images in discriminant analysis: A study into schizophrenia, Medical Image Analysis, Epub 11 September 2006
  [pdf]
• K.S. Cover, Multiexponential reconstruction algorithm immune to false positive peak detection, Rev. Sci. Instrum. 2006;77:075101.
  [pdf]
• K.S. Cover, H. Vrenken, J.J. Geurts, B.W. van Oosten, B. Jelles, C.H., C.J. Stam, B.W. van Dijk, Multiple Sclerosis Patients Show a Highly Significant Decrease in Alpha Band Interhemispheric Synchronisation Measured Using MEG, Neuroimage 2006; 29(3): 783-788 Epub 2005 Oct 14
  [pdf]
• K.S. Cover, J.P.A. Verbunt, J.C de Munck and B.W. van Dijk, Fitting a single equivalent-current-dipole model to MEG data with exhaustive search optimization is a simple, practical and very robust method given the speed of modern computers, Proceedings of Biomag 2006. Vancouver, Canada, Aug 2006
  [pdf]
• K. van Gemert-Horsthuis, J. Florie, D. W. Hommes, C. Lavini, J.B. Reitsma, S.J. van Deventer and J. Stoker, Feasibility of evaluating Crohn's disease activity at 3.0 Tesla, Journal of Magnetic Resonance Imaging 2006; 24: 340-348
  [pdf]
• E.J. Griffith, M. Koutek, F.H. Post, T. Heus, and H.J.J. Jonker, A Reprocessing Tool for Quantitative Data Analysis in a Virtual Environment, Feature tracking in VR for cumulus cloud life-cycle studies. In: M. Slater and Y. Kitamura, eds. Proc. ACM VRST 2006, pp. 212-215
  [pdf]
• G. de Haan, E. Griffith, M. Koutek, and F. Post, Supportive interaction and hybrid interfaces in VEs, In: ASCI 2006 - Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging, June 2006
• G. de Haan, E. Griffith, M. Koutek, and F. Post, Hybrid interfaces in VEs: Intent and interaction, In: proc. Virtual Environments 2006, 12th Eurographics Symposium on Virtual Environments (R. Hubbold and M. Lin, eds.), pp. 109--118, May 2006
  [pdf]
• L.O. Hertzberger, e-Science and the VL-e approach, In: C. Priami, L. Cardelli and S. Emmott (Eds.): Transactions in Computational Systems Biology IV, LNCS Vol. 3939, pp. 58-67, Springer Verlag Berlin Heidelberg 2006
  [pdf]
• P. R. Krekel, C. P. Botha, E. R. Valstar, P. W. de Bruin, P.M. Rozing and F. H. Post, Interactive simulation and comparative visualisation of the bone-determined range of motion of the human shoulder, In: Proceedings of the 17th Conference on Simulation and Visualization (SimVis2006), Magdeburg, March 2-3, 2006
  [pdf]
• S.D. Olabarriaga, P.T. de Boer, K. Maheshwari, A. Belloum, J.G. Snel, A.J. Nederveen and M. Bouwhuis, Virtual Lab for fMRI: Bridging the Usability Gap, Second IEEE International Conference on e-Science and Grid Computing (e-Science'06), Amsterdam 2006, Proceedings, p.53
  [pdf]
• S.D. Olabarriaga, A. Nederveen, J.G. Snel, R.G. Belleman, Towards a Virtual Laboratory for fMRI Data Management and Analysis, HealthGrid 2006, Valencia, 6-9 June 2006, Proceedings published in the Studies in Health Technology and Informatics series, Vol. 120
  [pdf]
• J.G. Snel, S.D. Olabarriaga, J. Alkemade, H.G. van Andel, A.J. Nederveen, C.B. Majoie, G.J. den Heeten, M. van Straten and R.G. Belleman, A Distributed Workflow Management System for Automated Medical Image Analysis and Logistics, In: Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems, 2006, Special track on Grids for Biomedical Informatics, Salt Lake City, June 2006, pp. 733-738
  [pdf]
• M.M.L. de Win, L. Reneman, G. Jager, E.P. Vlieger, S.D. Olabarriaga, C. Lavini, I. Bisschops, C.B.L.M. Majoie, J. Booij, W. van den Brink and G.J. den Heeten, A Prospective Cohort Study on Sustained Effects of Low-Dose Ecstasy Use on the Brain in New Ecstasy Users, Neuropsychopharmacology 2007; 32: 458-470
  [pdf]

2005

• C. P. Botha, T. de Graaf, R. Root, P. Wielopolski, S. Schutte, F. H. Post, F. C. van der Helm, and H. Simonsz, Time-varying three-dimensional vector field visualisation for the analysis of retrobulbar fat mobility during eye motion, in ASCI 2005 Proceedings of the 11th annual conference of the Advanced School for Computing and Imaging (B. Kröse, H. Bos, E. Hendriks, and J. Heijnsdijk, eds.), pp. 271-275, June 2005
  [pdf]
• C.P. Botha and F.H. Post, Improved perspective visibility ordering for object-order volume rendering, The Visual Computer 2005; 21(11): 887-896
  [pdf]
• E.J. Griffith, F.H. Post, M. Koutek, T. Heus, and H.J.J. Jonker, Feature Tracking in VR for Cumulus Cloud Life-Cycle Studies, In: Proceedings of the 9th IPT and 11th Eurographics Virtual Environments Workshop (EGVE) '05 (E. Kjems and R. Blach, eds.), pp. 121--128, October 2005
  [pdf]
• G. de Haan, M. Koutek, and F. Post, IntenSelect: Using Dynamic Object Rating for Assisting 3D Object Selection, In: Proceedings of the 9th IPT and 11th Eurographics VE Workshop (EGVE) '05 (E. Kjems and R. Blach, eds.), pp. 201--209, 2005
  [pdf]
• C.B.L.M. Majoie, M.E. Sprengers, W.J.J. van Rooij, C. Lavini, M. Sluzewski, J.C. van Rijn and G.J. den Heeten, MR angiography at 3T versus digital subtraction angiography in the follow-up of intracranial aneurysms treated with detachable coils, Am. J. Neuroradiol. 2005; 26: 1349-1356
  [pdf]
• R. Root, T. R. de Graaf, C. P. Botha, P. Wielopolski, S. Schutte, F. C. T. van der Helm, and H. J. Simonsz, "Deformation of retrobulbar fat analysis with optical flow technique", in Proceedings of the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting, 2005
• J. van Zwieten, C. P. Botha, B. Willekens, S. Schutte, F. H. Post, and H. J. Simonsz, Digital 3D reconstruction of human orbitae from high resolution serial sections, in Proceedings of the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting, 2005, Springer Verlag, Vol. 4142/2006, pp. 636-647